Trouble with R CMD check
On 3/7/2008 1:21 PM, Shewcraft, Ryan wrote:
Friends, I changed one line of a package at the source level and then rebuilt it. When I run R CMD check, I get an error:
You're getting lots of warnings from the compiler; presumably those have nothing to do with you. Then at the end you're getting an error because you haven't set up your R toolset completely: hhc: not found This is the Microsoft Help Workshop help compiler. Either you didn't install it, or didn't put it in the right place. But you can avoid the error by just not building compiled help, using Rcmd install --docs=normal polsplineRS Duncan Murdoch
installing R.css in C:/polsplineRS.Rcheck ---------- Making package polsplineRS ------------ adding build stamp to DESCRIPTION making DLL ... making hareall.d from hareall.c making heftall.d from heftall.c making lsdall.d from lsdall.c making lspecall.d from lspecall.c making nlsd.d from nlsd.c making polyall.d from polyall.c making polymars.d from polymars.c gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c hareall.c -o hareall.o hareall.c: In function `gremdim': hareall.c:2127: warning: unused variable `x' hareall.c: In function `compall': hareall.c:1656: warning: 'lala' might be used uninitialized in this function hareall.c: In function `newton': hareall.c:1876: warning: 'rall' might be used uninitialized in this function hareall.c: In function `search': hareall.c:646: warning: 'iloc' might be used uninitialized in this function hareall.c:646: warning: 'lloc' might be used uninitialized in this function hareall.c:646: warning: 'uloc' might be used uninitialized in this function hareall.c: In function `adders': hareall.c:529: warning: 'crit1' might be used uninitialized in this function hareall.c: In function `share': hareall.c:2126: warning: 'bb1' might be used uninitialized in this function hareall.c:2126: warning: 'bt1' might be used uninitialized in this function hareall.c:2126: warning: 'bb2' might be used uninitialized in this function hareall.c:2126: warning: 'bw' might be used uninitialized in this function hareall.c:2127: warning: 'wald' might be used uninitialized in this function hareall.c: In function `sphare': hareall.c:3417: warning: 's' might be used uninitialized in this function hareall.c: At top level: hareall.c:132: warning: 'iigvector' declared `static' but never defined gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c heftall.c -o heftall.o heftall.c: In function `sheft': heftall.c:301: warning: 'nintx' might be used uninitialized in this function heftall.c:301: warning: 'addi' might be used uninitialized in this function heftall.c:1848: warning: 'loloc' might be used uninitialized in this function heftall.c:1848: warning: 'uploc' might be used uninitialized in this function heftall.c:1848: warning: 'nowloc1' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c lsdall.c -o lsdall.o lsdall.c: In function `knotplace': lsdall.c:1890: warning: 'ia' might be used uninitialized in this function lsdall.c:1895: warning: 'u3' might be used uninitialized in this function lsdall.c:1895: warning: 'u4' might be used uninitialized in this function lsdall.c: In function `liter': lsdall.c:369: warning: 'zerror' might be used uninitialized in this function lsdall.c:370: warning: 'newlikelihood' might be used uninitialized in this function lsdall.c: In function `logcensor': lsdall.c:51: warning: 'xnknots' might be used uninitialized in this function lsdall.c:55: warning: 'xczheta' might be used uninitialized in this function lsdall.c: In function `pqlsd': lsdall.c:2908: warning: 'j' might be used uninitialized in this function lsdall.c: At top level: lsdall.c:1458: warning: 'fun2' defined but not used lsdall.c:1471: warning: 'fun48' defined but not used gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c lspecall.c -o lspecall.o lspecall.c: In function `tsadd': lspecall.c:626: warning: 'b2' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c nlsd.c -o nlsd.o nlsd.c: In function `ludcmp': nlsd.c:695: warning: 'imax' might be used uninitialized in this function nlsd.c: In function `setupspace': nlsd.c:1717: warning: 'm' might be used uninitialized in this function nlsd.c: In function `startspace': nlsd.c:1838: warning: 'l' might be used uninitialized in this function nlsd.c: In function `pompall': nlsd.c:1158: warning: 'f' might be used uninitialized in this function nlsd.c: In function `nlsd': nlsd.c:747: warning: 'nowloc1' might be used uninitialized in this function nlsd.c:747: warning: 'loloc' might be used uninitialized in this function nlsd.c:747: warning: 'uploc' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c polyall.c -o polyall.o polyall.c: In function `poly': polyall.c:3121: warning: 'okd' might be used uninitialized in this function polyall.c:2777: warning: 'aj' might be used uninitialized in this function polyall.c:2777: warning: 'ak' might be used uninitialized in this function polyall.c:2777: warning: 'sj' might be used uninitialized in this function polyall.c:2777: warning: 'sk' might be used uninitialized in this function polyall.c:2777: warning: 'bbi' might be used uninitialized in this function polyall.c:2777: warning: 'bbj' might be used uninitialized in this function polyall.c:2777: warning: 'bbk' might be used uninitialized in this function polyall.c:2778: warning: 'baj' might be used uninitialized in this function polyall.c:2778: warning: 'bak' might be used uninitialized in this function polyall.c:2778: warning: 'bsj' might be used uninitialized in this function polyall.c:2778: warning: 'bsk' might be used uninitialized in this function polyall.c:395: warning: 'iloc' might be used uninitialized in this function polyall.c:395: warning: 'lloc' might be used uninitialized in this function polyall.c:395: warning: 'uloc' might be used uninitialized in this function polyall.c: In function `proj': polyall.c:1794: warning: 'k' might be used uninitialized in this function polyall.c:1794: warning: 'k0' might be used uninitialized in this function polyall.c:1794: warning: 'k1' might be used uninitialized in this function polyall.c:1794: warning: 'k2' might be used uninitialized in this function polyall.c:1794: warning: 'k3' might be used uninitialized in this function polyall.c:1794: warning: 'k4' might be used uninitialized in this function polyall.c:1794: warning: 'k5' might be used uninitialized in this function polyall.c:1794: warning: 'k6' might be used uninitialized in this function polyall.c: In function `spoly': polyall.c:945: warning: 'numbers' might be used uninitialized in this function polyall.c:946: warning: 'ranges' might be used uninitialized in this function polyall.c:948: warning: 'tdata' might be used uninitialized in this function polyall.c:948: warning: 'zdata' might be used uninitialized in this function polyall.c:949: warning: 'loss' might be used uninitialized in this function polyall.c:1575: warning: 'bestl' might be used uninitialized in this function polyall.c:1575: warning: 'bestu' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c polymars.c -o polymars.o polymars.c: In function `fit_model': polymars.c:513: warning: unused variable `intercept_sd' polymars.c: In function `find_best_candidate': polymars.c:1361: warning: unused variable `dok1' polymars.c:1361: warning: unused variable `dok2' polymars.c: In function `initial_model': polymars.c:2585: warning: unused variable `mesh_index' polymars.c: In function `lsame': polymars.c:3925: warning: suggest parentheses around && within || polymars.c:3926: warning: suggest parentheses around && within || polymars.c:3929: warning: suggest parentheses around && within || polymars.c:3930: warning: suggest parentheses around && within || polymars.c: In function `dspmv': polymars.c:4963: warning: suggest parentheses around && within || polymars.c: In function `condition': polymars.c:6566: warning: unused variable `tt' polymars.c: In function `fit_as_candidate': polymars.c:1046: warning: 'knot1_value' might be used uninitialized in this function polymars.c:1046: warning: 'knot2_value' might be used uninitialized in this function polymars.c: In function `find_best_candidate': polymars.c:1686: warning: 'current_predictor_values2' might be used uninitialized in this function polymars.c:1686: warning: 'knot1_value' might be used uninitialized in this function polymars.c:1686: warning: 'knot2_value' might be used uninitialized in this function polymars.c: In function `fit_model': polymars.c:2164: warning: 'trailing_column' might be used uninitialized in this function polymars.c:2586: warning: 'knot_1_value' might be used uninitialized in this function polymars.c:2586: warning: 'knot_2_value' might be used uninitialized in this function polymars.c:2591: warning: 'means' might be used uninitialized in this function polymars.c:2591: warning: 'SDs' might be used uninitialized in this function polymars.c: In function `polymars': polymars.c:358: warning: 'mesh' might be used uninitialized in this function polymars.c:6318: warning: 'mesh' might be used uninitialized in this function polymars.c:6318: warning: 'mesh' might be used uninitialized in this function g77 -O2 -Wall -c allpack.f -o allpack.o allpack.f: In subroutine `xdsidi': In file included from allpack.f:0: allpack.f:476: warning: 'ten' might be used uninitialized in this function windres --include-dir c:/PROGRA~1/R/R-24~1.1/include -i polsplineRS_res.rc -o polsplineRS_res.o gcc -shared -s -o polsplineRS.dll polsplineRS.def hareall.o heftall.o lsdall.o lspecall.o nlsd.o polyall.o polymars.o allpack.o polsplineRS_res.o -Lc:/PROGRA~1/R/R-24~1.1/bin -Lc:/PROGRA~1/R/R-24~1.1/bin -lRblas -lg2c -lg2c -lR ... DLL made installing DLL installing R files installing man source files installing indices installing help
>>> Building/Updating help pages for package 'polsplineRS'
Formats: text html latex example chm beta.polyclass text html latex example chm clspec text html latex example chm cpolyclass text html latex example chm design.polymars text html latex example chm dhare text html latex example chm dheft text html latex example chm dlogspline text html latex example chm doldlogspline text html latex example chm hare text html latex example chm heft text html latex example chm logspline text html latex example chm lspec text html latex example chm oldlogspline text html latex example chm persp.polymars text html latex chm plot.hare text html latex example chm plot.heft text html latex example chm plot.logspline text html latex example chm plot.lspec text html latex example chm plot.oldlogspline text html latex example chm plot.polyclass text html latex example chm plot.polymars text html latex example chm polyclass text html latex example chm polymars text html latex example chm predict.polymars text html latex example chm summary.hare text html latex example chm summary.heft text html latex example chm summary.logspline text html latex example chm summary.lspec text html latex example chm summary.oldlogspline text html latex example chm summary.polyclass text html latex example chm summary.polymars text html latex example chm testhare text html latex example chm unstrip text html latex example chm xhare text html latex chm hhc: not found cp: cannot stat `C:/polsplineRS.Rcheck/00_pkg_src/polsplineRS/chm/polsplineRS.chm': No such file or directory make[1]: *** [chm-polsplineRS] Error 1 make: *** [pkg-polsplineRS] Error 2 *** Installation of polsplineRS failed *** Removing 'C:/polsplineRS.Rcheck/polsplineRS' I am slowly figuring out all of this R stuff so I apologize for continually bothering everyone. Thanks, Ryan Shewcraft The Blackstone Group, L.P.
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