cluster/snow question
On Tue, 9 Sep 2008, tolga.i.uzuner at jpmorgan.com wrote:
Hi Markus, Many thanks. Is the "cluster" variable you mention below available in the environment of the nodes ? Specifically, within that environment, how could one identify the rank of that specific node ?
No -- that isn't the way snow works. With snow the partitioning is done on the master. If you need a node to know how many other nodes there are or which index it represents in a clusterApply call then you need to pass that information in the arguments. luke
My code would use that information to partition the problem. Thanks, Tolga Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de> 09/09/2008 07:11 Please respond to schmidb at ibe.med.uni-muenchen.de To tolga.i.uzuner at jpmorgan.com cc r-help at r-project.org Subject Re: [R] cluster/snow question Hi Tolga, in SNOW you have to start a cluster with the command
library(snow) cluster <- makeCluster(#nodes)
The object "cluster" is a list with an object for each node and each object again is a list with all informations (rank, comm, tags) The size of the cluster is the length of the list.
#nodes == length(cluster)
E.g. the rank for node one you can get by
cluster[[1]]$rank
Best Markus tolga.i.uzuner at jpmorgan.com schrieb:
Dear R Users, I am attempting to use the snow package for clustering. Is there a way
to
identfy, in the environment of each node, a rank for that node and also,
the total size of the cluster ? By way of analogy, I am looking for the functions in snow equivalent to mpi.comm.rank() and mpi.comm.size() from RMPI, in case that makes things
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http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?? M??chen IBE - Institut f?? medizinische Informationsverarbeitung, Biometrie und Epidemiologie Marchioninistr. 15, D-81377 Muenchen URL: http://ibe.web.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de Tel: +49 (089) 7095 - 4599 Generally, this communication is for informational purposes only and it is not intended as an offer or solicitation for the purchase or sale of any financial instrument or as an official confirmation of any transaction. In the event you are receiving the offering materials attached below related to your interest in hedge funds or private equity, this communication may be intended as an offer or solicitation for the purchase or sale of such fund(s). All market prices, data and other information are not warranted as to completeness or accuracy and are subject to change without notice. Any comments or statements made herein do not necessarily reflect those of JPMorgan Chase & Co., its subsidiaries and affiliates. This transmission may contain information that is privileged, confidential, legally privileged, and/or exempt from disclosure under applicable law. If you are not the intended recipient, you are hereby notified that any disclosure, copying, distribution, or use of the information contained herein (including any reliance thereon) is STRICTLY PROHIBITED. Although this transmission and any attachments are believed to be free of any virus or other defect that might affect any computer system into which it is received and opened, it is the responsibility of the recipient to ensure that it is virus free and no responsibility is accepted by JPMorgan Chase & Co., its subsidiaries and affiliates, as applicable, for any loss or damage arising in any way from its use. If you received this transmission in error, please immediately contact the sender and destroy the material in its entirety, whether in electronic or hard copy format. Thank you. Please refer to http://www.jpmorgan.com/pages/disclosures for disclosures relating to UK legal entities. [[alternative HTML version deleted]]
Luke Tierney
Chair, Statistics and Actuarial Science
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