Message-ID: <4EB287FA.9060305@fhcrc.org>
Date: 2011-11-03T12:24:26Z
From: Martin Morgan
Subject: Error: serialization is too large to store in a raw vector
In-Reply-To: <1320273427.56875.YahooMailNeo@web120104.mail.ne1.yahoo.com>
On 11/02/2011 03:37 PM, Alaios wrote:
> Dear all,
> I have quite large code (with lapply and mclapply)
> and I am getting the following error.
>
> Error: serialization is too large to store in a raw vector
>
> Is it possible to ask from R to extend the Error messages with more details?
> I would like to see where this problem exists.
This is likely from the return value of mclapply's FUN:
parallel:::sendMaster tries to serialize it, and fails.
serialize(integer(.Machine$integer.max / 4), NULL, TRUE)
do further data reduction before trying to return the results (probably
a parallel 'best practices' anyway). Neither traceback() nor
options(error=recover) deal gracefully with mclapply errors like this.
Hope that helps,
Martin
>
> B.R
> Alex
> [[alternative HTML version deleted]]
>
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