Odp: Error in matrix, not ordered vectors or numerical value, and SIAR.
Re: [R] Odp: Error in matrix, not ordered vectors or numerical value,
and SIAR.
Thank-you Petr. I have consulted as many manuals and help pages, and search engines, and trying various things in SIAR, but continuous errors prevail.. I have tried changing all matrices to numeric, but the first column , of
the
two latter matrices, returns as NA. Any other suggestions?
I had put in one of these messages more detail about data, see below.
pond <- c("A3", "A3", "A3", "B3", "B3", "B3","C2", "A7", "A7")
d13C <- c(-22.07, -20.39, -21.11...)
d15N <- c(16.06, 17.13, 16.7, ...)
FConsumerData <- data.frame(pond, d13C, d15N)
FTEFData <- data.frame(tefsources, tefMeand13C, tefSDd13C, tefMeand15N,
tefSDd15N)
sources <- c("Copepoda", "Algal Paste", "Amphipoda",
Meand13C <- c(-26.57, -20.41, -21.65,...
SDd13C <- c(1.78, 4.01, 1.46,...
Meand15N <- c(15.55, 9.58, 14.07...
SDd15N <- c(1.77, 1.34, 1.66,...
FSourceData <- data.frame(sources, Meand13C, SDd13C, Meand15N, SDd15N)
tefsources <- c("Copepoda", "Algal Paste", "Amphipoda",...
tefMeand13C <- c(0.4, 0.4, 0.4,...
tefSDd13C <- c(1.3, 1.3, 1.3,
tefMeand15N <- c(3.4, 3.4, 3.4,
tefSDd15N <- c(1.0, 1.0, 1.0,
Hope that helps explain?
Not much. FConsumerData is data frame with nonnumeric first column, the same is with FTEFData and FSourceData. If you change it to matrix you will get character matrix. Trying to change character values to numeric obviously leads to NA. How the poor R shall know what number it shall make from A3, B3, C2 or A7? I do not use siar package but in the help page it is clearly stated that input shall be ***numeric*** matrices. Not data frames, not character values not factors. If you do not know distinction among those objects you shall look into R intro document (at least first 6 chapters) which should came along with your installation. BTW, in help page there is out <- siarmcmcdirichletv4(geese1demo,sourcesdemo,correctionsdemo,concdepdemo) It does not produce any error does it? If it does not produce any error it is sign that something is wrong with your data. Look at structure of your objects you are trying to evaluate and compare it with those demo objects. str(object) is the first option when something does not seem to be OK. Regards Petr
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matrix-not-ordered-vectors-or-numerical-value-and-SIAR-tp4024578p4030650.html
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