Message-ID: <493E88DB.5050900@med.cornell.edu>
Date: 2008-12-09T15:03:55Z
From: Alessia Deglincerti
Subject: motif search
Hi,
I am very new to R and wanted to know if there is a package that, given
very long nucleotide sequences, searches and identifies short (7-10nt)
motifs.. I would like to look for enrichment of certain motifs in
genomic sequences.
I tried using MEME (not an R package, I know), but the online version
only allows sequences up to MAX 60000 nucleotides, and that's too short
for my needs..
Thanks
A