problem with opening more than one SOCK cluster with package snow
On 19/12/2012 18:57, Jannis wrote:
Dear list, i have some problems using the snow package to create a SOCK cluster. The errors just occour irregularly but it seems to me that they occour when I try to create more than one cluster on the same machine via different R instances started via submitting LSF jobs to a cluster. Does anyone have an idea how to solve this or where to start digging for solutions?
Yes. My guess is that you are starting snow clusters simultaneously. The message gives you a pretty big clue: use different ports for different clusters (it is an option to makeCluster). Also that that it is over a year since snow was superseded by an improved version in package 'parallel', so why are you still using the original?
The error messages are: library(snow) cl <- makeCluster(8, type = "SOCK") Error in socketConnection(port = port, server = TRUE, blocking = TRUE, : cannot open the connection Calls: run.call ... makeCluster -> makeSOCKcluster -> newSOCKnode -> socketConnection In addition: Warning message: In socketConnection(port = port, server = TRUE, blocking = TRUE, : port 10187 cannot be opened R version 2.15.1 (2012-06-22) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] snow_0.3-10 Thanks a lot Jannis
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