compositional data: percent values sum up to 1
On Mon, 2 Jun 2003, Spencer Graves wrote:
"glm" will do multinomial logistic regression. However, if J is large,
Strictly, no, it will not as that is not a GLM. glm() can only do it via surrogate Poisson models. multinom in nnet(VR) will do multinomial logistic regression.
I doubt if that will do what you want. If it were my problem, I might feel a need to read the code for "glm" and modify it to do what I want. Perhaps someone else can suggest something better. hth. spencer graves Christoph Lehmann wrote:
I want to do a logistic regression analysis, and to compare with, a discriminant analysis. The mentioned power maps are my exogenous data, the dependent variable (not mentioned so far) is a diagnosis (ill/healthy) thanks for the interest and the help Christoph On Sun, 2003-06-01 at 21:01, Spencer Graves wrote:
What are you trying to do? What I would do with this depends on many factors. spencer graves Christoph Lehmann wrote:
again, under another subject: sorry, maybe an all too trivial question. But we have power data from J frequency spectra and to have the same range for the data of all our subjects, we just transformed them into % values, pseudo-code: power[i,j]=power[i,j]/sum(power[i,1:J]) of course, now we have a perfect linear relationship in our x design-matrix, since all power-values for each subject sum up to 1. How shall we solve this problem: just eliminate one column of x, or introduce a restriction which says exactly that our power data sum up to 1 for each subject? Thanks a lot Christoph
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Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595