errors with compilation
Please try the R-patched.version of R (see the posting guide or the FAQ). That seems to be about an error in the R 2.8.0 sources that was corrected in October, and only happens if you do not ask for X11 support (which most R users need, including it seems all the pre-release testers).
On Tue, 9 Dec 2008, Jason Tan wrote:
Hi, i'm trying to compile R on a Cray XT3 using pgi/7.2.1 - CNL (compute node linux) The R version is 2.8.0 this is the option -enable-R-static-lib=yes --disable-R-shlib
/* The latter is the default */
CPICFLAGS=fpic FPICFLAGS=fpic CXXPICFLAGS=fpic SHLIB_LDFLAGS=shared --with-x=no SHLIB_CXXLDFLAGS=shared --disable-BLAS-shlib
Do you really need to set all these? And are you sure you know the
correct values? ('-shared' is standard on Linux.)
CFLAGS="-g -O2 -Kieee" FFLAGS="-g -O2 -Kieee" CXXFLAGS="-g -O2 -Kieee" FCFLAGS="-g -O2 -Kieee" CC=cc F77=ftn CXX=CC FC=ftn R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /lus/nid00036/jasont/R C compiler: cc -g -O2 -Kieee Fortran 77 compiler: ftn -g -O2 -Kieee C++ compiler: CC -g -O2 -Kieee Fortran 90/95 compiler: ftn -g -O2 -Kieee Obj-C compiler: gcc -g -O2 Interfaces supported: External libraries: readline Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: static R library, R profiling, Java Recommended packages: yes The error is : cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -Kieee -c pcre.c -o pcre.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 108) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 109) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 110) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 111) PGC/x86-64 Linux 7.2-1: compilation completed with warnings cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -Kieee -c platform.c -o platform.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used PGC-S-0037-Syntax error: Recovery attempted by deleting identifier FALSE (platform.c: 1657) PGC-S-0094-Illegal type conversion required (platform.c: 1661) PGC/x86-64 Linux 7.2-1: compilation completed with severe errors make[3]: *** [platform.o] Error 2 make[3]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src' make: *** [R] Error 1 Jason Tan Senior Computer Support Officer Western Australian Supercomputer Program (WASP) The University of Western Australia M024 35 Stirling Highway CRAWLEY WA 6009 Ph: +618 64888742 Fax: +618 6488 8088 Email: jason.tan at uwa.edu.au Web: www.wasp.uwa.edu.au
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Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595