How to catch both warnings and errors?
On Dec 5, 2010, at 3:13 PM, Marius Hofert wrote:
Dear expeRts, I am struggling with warning/error handling. I would like to call a function which can produce either a) normal output b) a warning c) an error Since the function is called several (thousand) times in a loop, I would like to proceed "quietly" and collect the warnings and errors [to deal with them at a later point].
I do not see the function warnings() being used below: ?warnings It delivers the stored warnings with different default behavior for interactive and non-interactive sessions.
I have seen constructs with tryCatch (which can deal with errors) and with withCallingHandlers (which can deal with warnings), but I cannot figure out how to catch *both* warnings and errors. Below is a minimal example of the function that is called several times in a large loop. The function should catch warnings and errors; the former work fine, but with the latter I do not know how to proceed.
Made some changes in you code but don't know if it is what you were
hoping for:
f <- function(x){
## warnings
w.list <- NULL # init warning
w.handler <- function(w){ # warning handler
warn <- simpleWarning(w$message, w$call) # build warning
# first change here
w.list <<- c(w.list, paste(warnings(), collapse = " ")) # save
warning
invokeRestart("muffleWarning")
}
## errors
e.list <- NULL # init errors # not sure this is good idea
e.handler <- function(e){ # error handler
err <- c(e.list, e$message, e$call) # save error
return( err)
}
## execute command
# wrapped cal in try()
res <- withCallingHandlers(try(log(x)), warning = w.handler, error
= e.handler)
## return result with warnings and errors
list(result = res, warning = w.list, error = e.list)
}
The function should *always* return the list with the three components. How can I achieve this? Cheers, Marius Ps: How can I get the warning/error message in a nice string (as it is printed in a normal warning/error message)? The approach shown below is somehow ugly. Basically, I had trouble converting the call w$call to a string. ## based on http://tolstoy.newcastle.edu.au/R/help/04/06/0217.html ## and http://www.mail-archive.com/r-help at r-project.org/msg81380.html f <- function(x){ ## warnings w.list <- NULL # init warning w.handler <- function(w){ # warning handler warn <- simpleWarning(w$message, w$call) # build warning w.list <<- c(w.list, paste(warn, collapse = " ")) # save warning invokeRestart("muffleWarning") } ## errors e.list <- NULL # init errors e.handler <- function(e){ # error handler err <- simpleError(e$message, e$call) e.list <<- c(e.list, paste(err, collapse = " ")) # save error } ## execute command res <- withCallingHandlers(log(x), warning = w.handler, error = e.handler) ## return result with warnings and errors list(result = res, warning = w.list, error = e.list) } f(1) f(-1) f("a")
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