Robust Non-linear Regression
you might consider nlrq() in the quantreg package, which does median regression for nonlinear response functions.... url: www.econ.uiuc.edu/~roger Roger Koenker email rkoenker at uiuc.edu Department of Economics vox: 217-333-4558 University of Illinois fax: 217-244-6678 Champaign, IL 61820
On Nov 13, 2005, at 3:47 PM, Vermeiren, Hans [VRCBE] wrote:
Hi, I'm trying to use Robust non-linear regression to fit dose response curves. Maybe I didnt look good enough, but I dind't find robust methods for NON linear regression implemented in R. A method that looked good to me but is unfortunately not (yet) implemented in R is described in http://www.graphpad.com/articles/RobustNonlinearRegression_files/ frame.htm <http://www.graphpad.com/articles/RobustNonlinearRegression_files/ frame.htm> in short: instead of using the premise that the residuals are gaussian they propose a Lorentzian distribution, in stead of minimizing the squared residus SUM (Y-Yhat)^2, the objective function is now SUM log(1+(Y-Yhat)^2/ RobustSD) where RobustSD is the 68th percentile of the absolute value of the residues my question is: is there a smart and elegant way to change to objective function from squared Distance to log(1+D^2/Rsd^2) ? or alternatively to write this as a weighted non-linear regression where the weights are recalculated during the iterations in nlme it is possible to specify weights, possibly that is the way to do it, but I didn't manage to get it working the weights should then be something like: SUM (log(1+(resid(.)/quantile(all_residuals,0.68))^2)) / SUM (resid (.)) the test data I use : x<-seq(-5,-2,length=50) x<-rep(x,4) y<-SSfpl(x,0,100,-3.5,1) y<-y+rnorm(length(y),sd=5) y[sample(1:length(y),floor(length(y)/50))]<-200 # add 2% outliers at 200 thanks a lot Hans Vermeiren [[alternative HTML version deleted]]
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