Win Server x64/R: Memory Allocation Problem
On Wed, Jul 14, 2010 at 05:51:17PM +0200, will.eagle at gmx.net wrote:
Dear all, how can I use R on a 64-bit Windows Server 2003 machine (24GB RAM) with more than 3GB of working memory and make full use of it. I started R --max-mem-size=3G since I got the warning that larger values are too large and ignored. In R I got:
memory.size(max=FALSE)
[1] 10.5
memory.size(max=TRUE)
[1] 12.69
memory.limit()
[1] 3072 but when I run the next command, I get an error:
climb.expset <- ReadAffy(celfile.path="./Data/Original/CLIMB/CEL/")
Error: cannot allocate vector of size 2.4 Gb Here is the R version I am using: platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 version.string R version 2.11.1 (2010-05-31) What can I do?
Maybe you want to consider switching to the 64-bit version of R.
Regards, Dirk