design matrix creation in R
On Jul 3, 2012, at 4:10 PM, mmstat at comcast.net wrote:
Hello, I want to create a design matrix using R. Can you explain the code which creates the following please? I understand the first part.
What first part if the next part is ... this ?
b=g1(?) does what?
That's just generating a factor variable.
dd <- data.frame(a = gl(3,4), b = gl(4,1,12)) # balanced 2-way dd a b 1 1 1 2 1 2 3 1 3 4 1 4 5 2 1 6 2 2 7 2 3 8 2 4 9 3 1 10 3 2 11 3 3 12 3 4 I am using the tree dataset in R. I want to form a reparameterized design matrix in ones, zeroes and minus ones. The dataframe dd is very important here. Can anyone assist here? Thanks in advance.
Something like this?
model.matrix(~a+b, data= dd, contrasts = list(a="contr.sum",
b="contr.sum") )
(Intercept) a1 a2 b1 b2 b3
1 1 1 0 1 0 0
2 1 1 0 0 1 0
3 1 1 0 0 0 1
4 1 1 0 -1 -1 -1
5 1 0 1 1 0 0
6 1 0 1 0 1 0
7 1 0 1 0 0 1
8 1 0 1 -1 -1 -1
9 1 -1 -1 1 0 0
10 1 -1 -1 0 1 0
11 1 -1 -1 0 0 1
12 1 -1 -1 -1 -1 -1
attr(,"assign")
[1] 0 1 1 2 2 2
attr(,"contrasts")
attr(,"contrasts")$a
[1] "contr.sum"
attr(,"contrasts")$b
[1] "contr.sum"
David Winsemius, MD West Hartford, CT