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how to replace my double for loop which is little efficient!

Thank Berend,

It seems like that it is better to attach a PDF file for avoiding messy
code.

Yes, I want to obtain is Tanimoto coefficient and your web site "wikipedia"
is about this coefficient. I also search R site about tanimoto coefficient
and learn it more. 

About your code, I has saved and learned it. 

Thanks again


Kevin