How to make labels on my dendrogam look more clear and visible
On Thu, 27 Oct 2005 16:08:48 -0700 (PDT)
Srinivas Iyyer <srini_iyyer_bio at yahoo.com> wrote:
Dear group, I have a matrix with readings for ~180 variables observed in 240 conditions. I am doing a hierarchical clustering method (hclust) by calculating eucledian distances among them. When I plot the dendrogram from hclust, all my variables at the end of the branches are cluttered. I cannot read them properly. I tried using :
x11(width = 100, height = 70, pointsize = 10) plot(mydat.hcluster)
and also by
x11(width = 1000, height = 300, pointsize = 10) plot(mydat.hcluster)
I could not make the dendrogram branches go wide and make variables at the end of braches more legible. Can any one please help me to make a good diagram so that I can see the lables at the end of branches more clearly. Thank you. cheers Sri
I don't know if it'll help, but I've grown fond of postscript graphs. For example...
postscript("mydendogram.ps", height=800, width=2000, pointsize=[????])
plot(mydendogram)
dev.off()
gives me very clear print, and then the ps2pdf app can turn it into a pdf for e-mailing or import to a presentation. jon b