Drawing the regression line and the 95% confidence intervals
Brian, thanks for the precisions.
David, many thanks for your code that perfectly works.?
Best,
Sacha
De?: David L Carlson <dcarlson at tamu.edu>
??: "Cade, Brian" <cadeb at usgs.gov>; varin sacha <varinsacha at yahoo.fr>
Cc?: R-help Mailing List <r-help at r-project.org>
Envoy? le : Mercredi 6 mai 2015 21h52
Objet?: RE: [R] Drawing the regression line and the 95% confidence intervals
Something like this?
# Compute the prediction limits and get their range to set ylim=
plim <- predict(LinearModel.1, interval = "prediction")
rnge <- c(min(plim[ , 2]), max(plim[ , 3]))
plot(GDP.per.head, fitted(LinearModel.1),ylim=rnge)
# As before
devlm1<-lm(fitted(LinearModel.1)~GDP.per.head)
abline(devlm1)
conflm1<-confint(devlm1)
abline(coef=conflm1[,1],lty=2)
abline(coef=conflm1[,2],lty=2)
# Plot the prediction limits
segments(GDP.per.head, plim[ , 2], GDP.per.head, plim[ , 3], col="gray")
-------------------------------------
David L Carlson
Department of Anthropology
Texas A&M University
College Station, TX 77840-4352
-----Original Message-----
From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Cade, Brian
Sent: Wednesday, May 6, 2015 2:22 PM
To: varin sacha
Cc: R-help Mailing List
Subject: Re: [R] Drawing the regression line and the 95% confidence intervals
The prediction intervals are likely to be much wider than the confidence
intervals so you will need to be sure you scale the yaxis limits large
enough to see them.
Brian
Brian S. Cade, PhD
U. S. Geological Survey
Fort Collins Science Center
2150 Centre Ave., Bldg. C
Fort Collins, CO? 80526-8818
email:? cadeb at usgs.gov <brian_cade at usgs.gov>
tel:? 970 226-9326
Dear Jim,
[[elided Yahoo spam]]
The reproducible example is below. Last thing : I can easily get the predictions intervals but I don't get to draw them. If I want to draw on the same graph (the one I already have the confidence intervals) the prediction intervals. I have tried the abline function without success. How can I do ? GDP.per.head=c(600,560,340,560,580,300,570,900,680,290,590,340) Quality.score=c(4.5,6.5,6,4.5,7,3,9,10,12.5,6.5,7,9) Competitivness.score=c(1000,1200,1400,700,680,1010,340,560,690,500,690,460) LinearModel.1=lm(GDP.per.head ~ Quality.score + Competitivness.score) plot(GDP.per.head, fitted(LinearModel.1),ylim=c(200,800)) devlm1<-lm(fitted(LinearModel.1)~GDP.per.head) abline(devlm1) conflm1<-confint(devlm1) abline(coef=conflm1[,1],lty=2) abline(coef=conflm1[,2],lty=2) predict(LinearModel.1, interval = "prediction") Many thanks once more for your help. Sacha ----- Mail original ----- De : Jim Lemon <drjimlemon at gmail.com>
Cc : R-help Mailing List <r-help at r-project.org> Envoy? le : Mercredi 6 mai 2015 1h02 Objet : Re: [R] Drawing the regression line and the 95% confidence intervals Hi Sacha, The line you have requested is off the plot. The following will produce what I think you are asking, but I cannot speak for whether it means anything sensible. plot(GDP.per.head, fitted(LinearModel.1),ylim=c(200,800)) devlm1<-lm(fitted(LinearModel.1)~GDP.per.head) abline(devlm1) conflm1<-confint(devlm1) abline(coef=conflm1[,1],lty=2) abline(coef=conflm1[,2],lty=2) Jim
Hi, Dear R-helpers, Here below you will find a reproducible fictitious example working
except the "abline" function.
First thing : I try to draw the regression line (multiple linear
regression). I try the "abline" function but it does not work. I don't get any error message but the straight line does not appear on the scatterplot.
Second thing : I try to draw the 95% confidence intervals on the
regression line. How could I do ?
Using abline(0,1), I can of course add a line 45 degrees angle passing
through the origin (intercept=0 and slope=1), but it is not what I am looking for.
GDP.per.head=c(600,560,340,560,580,300,570,900,680,290,590,340) Quality.score=c(4.5,6.5,6,4.5,7,3,9,10,12.5,6.5,7,9)
Competitivness.score=c(1000,1200,1400,700,680,1010,340,560,690,500,690,460)
LinearModel.1=lm(GDP.per.head ~ Quality.score + Competitivness.score) plot(GDP.per.head, fitted(LinearModel.1)) abline(GDP.per.head, fitted(LinearModel.1)) Thanks for your help. Looking forward to reading you. Sacha
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