errors with compilation
thanks. i noticed a syntax error. a missing semi colon. any idea about the error below? cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rsock.c -o Rsock.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c internet.c -o internet.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanoftp.c -o nanoftp.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o nanohttp.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o sock.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -I. -I../../../src/include -I../../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o sockconn.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used cc -shared -fPIC -L/usr/local/lib64 -o internet.so Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used /usr/bin/ld: /usr/lib64/libpthread.a(ptw-fcntl.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/libpthread.a: could not read symbols: Bad value make[4]: *** [internet.so] Error 2 jason
On 09/12/2008, at 4:50 PM, Prof Brian Ripley wrote:
Please try the R-patched.version of R (see the posting guide or the FAQ). That seems to be about an error in the R 2.8.0 sources that was corrected in October, and only happens if you do not ask for X11 support (which most R users need, including it seems all the pre- release testers). On Tue, 9 Dec 2008, Jason Tan wrote:
Hi, i'm trying to compile R on a Cray XT3 using pgi/7.2.1 - CNL (compute node linux) The R version is 2.8.0 this is the option -enable-R-static-lib=yes --disable-R-shlib
/* The latter is the default */
CPICFLAGS=fpic FPICFLAGS=fpic CXXPICFLAGS=fpic SHLIB_LDFLAGS=shared --with-x=no SHLIB_CXXLDFLAGS=shared --disable-BLAS-shlib
Do you really need to set all these? And are you sure you know the
correct values? ('-shared' is standard on Linux.)
CFLAGS="-g -O2 -Kieee" FFLAGS="-g -O2 -Kieee" CXXFLAGS="-g -O2 -Kieee" FCFLAGS="-g -O2 -Kieee" CC=cc F77=ftn CXX=CC FC=ftn R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /lus/nid00036/jasont/R C compiler: cc -g -O2 -Kieee Fortran 77 compiler: ftn -g -O2 -Kieee C++ compiler: CC -g -O2 -Kieee Fortran 90/95 compiler: ftn -g -O2 -Kieee Obj-C compiler: gcc -g -O2 Interfaces supported: External libraries: readline Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: static R library, R profiling, Java Recommended packages: yes The error is : cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/ pcre -I. -I../../src/include -I../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -g -O2 -Kieee -c pcre.c -o pcre.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 108) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 109) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 110) PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h: 111) PGC/x86-64 Linux 7.2-1: compilation completed with warnings cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/ pcre -I. -I../../src/include -I../../src/include -I/usr/local/ include -DHAVE_CONFIG_H -g -O2 -Kieee -c platform.c -o platform.o /opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used PGC-S-0037-Syntax error: Recovery attempted by deleting identifier FALSE (platform.c: 1657) PGC-S-0094-Illegal type conversion required (platform.c: 1661) PGC/x86-64 Linux 7.2-1: compilation completed with severe errors make[3]: *** [platform.o] Error 2 make[3]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src' make: *** [R] Error 1 Jason Tan Senior Computer Support Officer Western Australian Supercomputer Program (WASP) The University of Western Australia M024 35 Stirling Highway CRAWLEY WA 6009 Ph: +618 64888742 Fax: +618 6488 8088 Email: jason.tan at uwa.edu.au Web: www.wasp.uwa.edu.au
______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
Jason Tan Senior Computer Support Officer Western Australian Supercomputer Program (WASP) The University of Western Australia M024 35 Stirling Highway CRAWLEY WA 6009 Ph: +618 64888742 Fax: +618 6488 8088 Email: jason.tan at uwa.edu.au Web: www.wasp.uwa.edu.au