Updating to nlme 3.1-62 failing from source (OS X)
This is an internal compiler/assembler error - please check that your tools are consistent and if so report this as a MacOS X error. (It is the sort of thing which happens if gcc targetted for one assembler is used with another, for example on Solaris with GNU vs Sun assemblers.) Given that the C code being compiled is unchanged since 3.1-60 which was successfully compiled by the maintainers, this does point to a problem local to you.
On Sun, 31 Jul 2005, Michael Kubovy wrote:
R Version 2.1.1 (2005-06-20); R Cocoa GUI 1.12 (1622); Mac OS X 10.4.2 (8C46) For nlme, the R package installer for CRAN (binaries) gives 3.1-60 as Repository Version as well as Installed Version.
The CRAN repository for MacOS X has not be updated for a couple of weeks.
For CRAN (sources) it gives 3.1-62 as Repository Version and 3.1-60
as Installed Version.
When I try to update nlme, I get
* Installing *source* package 'nlme' ...
** libs
gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/
include -I/usr/local/include -fno-common -g -O2 -c corStruct.c -o
corStruct.o
/var/tmp//ccOTBSDa.s:6088:** Removing '/Library/Frameworks/
R.framework/Versions/2.1.1/Resources/library/nlme'
** Restoring previous '/Library/Frameworks/R.framework/Versions/2.1.1/
Resources/library/nlme'
The downloaded packages are in
/private/tmp/RtmpL1j8Sa/downloaded_packages
Unknown pseudo-op: .p2align
/var/tmp//ccOTBSDa.s:6088:Rest of line ignored. 1st junk character
valued 50 (2).
/var/tmp//ccOTBSDa.s:6414:Unknown pseudo-op: .p2align
/var/tmp//ccOTBSDa.s:6414:Rest of line ignored. 1st junk character
valued 50 (2).
/var/tmp//ccOTBSDa.s:6608:Unknown pseudo-op: .p2align
/var/tmp//ccOTBSDa.s:6608:Rest of line ignored. 1st junk character
valued 50 (2).
/var/tmp//ccOTBSDa.s:7111:Unknown pseudo-op: .subsections_via_symbols
make: *** [corStruct.o] Error 1
ERROR: compilation failed for package 'nlme'
Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595