writing R shell scripts?
On Tue, 8 Nov 2005, Mike Miller wrote:
On Wed, 9 Nov 2005, Henrik Bengtsson wrote:
What you really want to do might be solved by write.table(), e.g. x <- matrix(rnorm(25*2),c(25,2)); write.table(file=stdout(), x, row.names=FALSE, col.names=FALSE);
Thanks. That does what I want.
There is one remaining problem for my "echo" method. While write.table
seems to do the right thing for me, R seems to add an extra newline to the
output when it closes. You can see that this produces exactly one newline
and nothing else:
# echo '' | R --slave --no-save | wc -c
1
Is there any way to stop R from sending an extra newline? It's funny
because normal running of R doesn't seem to terminate by sending a newline
to stdout. Oops -- I just figured it out. If I send "quit()", there is
no extra newline! Examples that send no extra newline:
echo 'quit()' | R --slave --no-save
echo "x <- matrix(rnorm(25*2),c(25,2)); write.table(file=stdout(), x, row.names=FALSE, col.names=FALSE); quit()" | R --slave --no-save
I suppose we can live with that as it is. Is this an intentional feature?
Yes. You get a prompt (suppressed here) and did not give an input for it, so a newline is needed to finish the line. R scripts should end in 'q()'.
Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595