Error in setwd(outDir) : cannot change working directory
On Wed, Feb 20, 2013 at 12:33 PM, Gabor Grothendieck
<ggrothendieck at gmail.com> wrote:
On Wed, Feb 20, 2013 at 11:54 AM, Joanna Papakonstantinou <joanna.papa at gmail.com> wrote:
I installed R on my Windows laptop in C:\Program Files\R\R-2.15.2
and am able to open RGUI (640bit), see packages and run commands. However,
when I test the installation and run the basic tests and all the tests on
the standard and recommended packages i.e.:
library("tools")
testInstalledBasic("both")
testInstalledPackages("base", errorsAreFatal = FALSE)
testInstalledPackages("recommended", errorsAreFatal = FALSE)
I am getting errors such as:
> testInstalledPackages("base",errorsAreFatal=FALSE)
Error in setwd(outDir) : cannot change working directory my working driectory is:
getwd()
[1] "C:/Users/jpapa/Documents" In which I see R folder as well as the .rData from my last session. what does the wd have to do with the output directory? Do I need to create an output directory? DO I need to setwd(outDir)? do i need to change the wd (for example to the Pogram Files directory where R is installed or to another directory I need to create? if so, how do I do this? i also noticed that i have packages in \library ?C:/Users/jpapa/Documents/R/win-library/2.15? and in library ?C:/Program Files/R/R-2.15.2/library?. Do all packages need to be in one place? If so, should they be in my Documents or in Program Files?
Its likely trying to write in the C:\Program Files tree but lacks permission. Run R with Administrator permissions or re-install R elsewhere, e.g. C:\R
Also regarding your questions your setup is the standard desirable setup (with a separate user library) and R in the \Program Files tree so there seems nothing wrong with your library setup or how R itself has been set up on your system.
Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com