Message-ID: <BBA2D956-3915-48E8-B7DD-072C47C71C71@comcast.net>
Date: 2011-01-30T17:25:54Z
From: David Winsemius
Subject: problem reading file containing bit vector
In-Reply-To: <AANLkTikmUJFefwNzEV6T_id+BLZRSpx1PkKSX=+8AHFM@mail.gmail.com>
On Jan 30, 2011, at 12:22 PM, Fahim M wrote:
> Hi I have a tab delimited file with fillowing content:
>
> "swissProtID" "entrezID" "bitVec"
> "Q62924" "---" "00000000100010000000000000000000"
> "P18897" "---" "00000000000001000100000000000000"
> "Q62736" "---" "00001000001000000000001000000000"
> "P13589" "---" "00100000010000010000000000000000"
>
> When I read this the bitVec field is not read properly. Instead, the
> value
> showing is "Inf" .
> How should i read this file? as.is/colclasses field in read
> function is not
> helping me.
"Not helping"? Show your code.
>
> Is there any package that can do bitwise operation(and/or) on
> bitVectors.
> bitops seems to do that but I need output in bitvector format only.
> Thanks
> Fahim
>
>
> --
> Fahim Mohammad
> Bioinforformatics Lab
> University of Louisville
David Winsemius, MD
West Hartford, CT