Align two protein sequences using BLAST
On Jan 5, 2010, at 10:46 AM, Tony Chiang wrote:
You should send this note to the biconductor mailing list rather than the R-help. As to your question, please look at the Biostrings bioconductor package.
The BioC webpages give a link to the Gmane archive for searching. A search on blast protein sequences produced 15 hits and this one seemed to be potentially relevant: http://article.gmane.org/gmane.science.biology.informatics.conductor/26460/match=blast+protein+sequences There may be other postings in that group of fifteen with relevant material. I just wanted to get you going in the right location, which is not this list.
David > > On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska < > alla.bullashevska at fdm.uni-freiburg.de> wrote: > >> >> Dear R users, >> I would like to align two protein sequences using BLAST >> (bl2seq). The question is whether this programm have been >> implemented in R. >> Thank you for your help, >> Alla. >> >> ______________________________________________ > David Winsemius, MD Heritage Laboratories West Hartford, CT