Message-ID: <677D92C6-9849-4B56-8D60-D5D2C667DAA3@comcast.net>
Date: 2010-01-05T15:52:31Z
From: David Winsemius
Subject: Align two protein sequences using BLAST
In-Reply-To: <52f663c41001050746n330b19a1x6fa249ea52e71bf@mail.gmail.com>
On Jan 5, 2010, at 10:46 AM, Tony Chiang wrote:
> You should send this note to the biconductor mailing list rather
> than the
> R-help. As to your question, please look at the Biostrings
> bioconductor
> package.
The BioC webpages give a link to the Gmane archive for searching. A
search on blast protein sequences produced 15 hits and this one seemed
to be potentially relevant:
http://article.gmane.org/gmane.science.biology.informatics.conductor/26460/match=blast+protein+sequences
There may be other postings in that group of fifteen with relevant
material. I just wanted to get you going in the right location, which
is not this list.
--
David
>
> On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska <
> alla.bullashevska at fdm.uni-freiburg.de> wrote:
>
>>
>> Dear R users,
>> I would like to align two protein sequences using BLAST
>> (bl2seq). The question is whether this programm have been
>> implemented in R.
>> Thank you for your help,
>> Alla.
>>
>> ______________________________________________
>
David Winsemius, MD
Heritage Laboratories
West Hartford, CT