best way to fit a model
On Fri, 9 Sep 2005 14:55:04 -0300 Ronaldo Reis-Jr. wrote:
Hi, I have some data that have this behaviour: | |******* | * | * | * | * |---------------- What is the best and simpler way to fit this in R?
If the changepoint is known, then this is straightforward using lm:
## generate example data
set.seed(20050909)
x <- seq(0, 10, by = 0.25)
y.mean <- ifelse(x >= 5, x, 5)
y <- y.mean + rnorm(41)
plot(y ~ x)
lines(y.mean ~ x)
## fit linear model with break
fm <- lm(y ~ I((x-5) * (x >= 5)))
fm
y.fit1 <- fitted(fm)
lines(y.fit1 ~ x, col = 2)
If it is unknown, it can be estimated using Vito Muggeo's segmented
package:
## estimate change point in x
library("segmented")
sfm <- segmented(lm(y ~ x), x, 6)
sfm
y.fit2 <- fitted(sfm)
lines(y.fit2 ~ x, col = 3)
This fits a continuous mean function. Alternatively, breakpoints() in
strucchange can be used to estimate a break point:
## estimate break point in x
library("strucchange")
bp <- breakpoints(y ~ x)
summary(bp)
y.fit3 <- fitted(bp)
lines(y.fit3 ~ x, col = 4)
This does not enforce that the line is continuous, hence the jump in the
fitted mean. Of course, the estimated breakpoint could be used to fit a
continuous line model, but this is not what is optimized in
breakpoints().
Z
Thanks Ronaldo -- Ela pilotava um Continenal 2001 com igni????o autom??tica Magiclic... -- |> // | \\ [***********************************] | ( ?? ?? ) [Ronaldo Reis J??nior ] |> V [UFV/DBA-Entomologia ] | / \ [36570-000 Vi??osa - MG ] |> /(.''`.)\ [Fone: 31-3899-4007 ] | /(: :' :)\ [chrysopa at insecta.ufv.br ] |>/ (`. `'` ) \[ICQ#: 5692561 | LinuxUser#: 205366 ] | ( `- ) [***********************************] |>> _/ \_Powered by GNU/Debian Woody/Sarge
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