creating a dataframe using a list of the variable names
Does this do what you want:
BOB <- c('A/A', 'C/C', '15/27')
MARY <- c('A/A', NA, '13/12')
JOHN <- c('A/A', 'C/A', '154/35')
CLIFF <- c('A/C', 'C/C', '15/12')
PAM <- c('A/C', 'C/A', '13/12')
sampleList <- c("BOB", "MARY", "JOHN", "CLIFF", "PAM")
polyList <- c("rs123", "rs124", "rs555")
x <- do.call(data.frame, lapply(sampleList, get))
names(x) <- sampleList
row.names(x) <- polyList
x
BOB MARY JOHN CLIFF PAM rs123 A/A A/A A/A A/C A/C rs124 C/C <NA> C/A C/C C/A rs555 15/27 13/12 154/35 15/12 13/12
On Sun, Jun 29, 2008 at 3:50 AM, Stephane Bourgeois <sb20 at sanger.ac.uk> wrote:
Hello,
I'm fairly new to R, and despite spending quite some time exploring, testing, and looking for answers, I still have a couple of questions remaining...
The first one is about creating a dataframe using a list of the variable names .
I get this output file from a database:
BOB <- c('A/A', 'C/C', '15/27')
MARY <- c('A/A', NA, '13/12')
JOHN <- c('A/A', 'C/A', '154/35')
CLIFF <- c('A/C', 'C/C', '15/12')
PAM <- c('A/C', 'C/A', '13/12')
sampleList <- c("BOB", "MARY", "JOHN", "CLIFF", "PAM")
polyList <- c("rs123", "rs124", "rs555")
to create a dataframe with the data I use:
data.raw <- data.frame(BOB, MARY, JOHN, CLIFF, PAM, row.names=polyList)
which works fine, but when there are several hundreds samples... well, you guess my problem.
I'd like to create the dataframe using the list of the variables, contained in sampleList - i.e. something like data.frame(function(sampleList), row.names=polyList)
Is that possible, and if yes, how?
Thanks in advance,
Stephane
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