How to define degree=1 in mgcv
On Sun, 2010-01-24 at 16:28 -0500, hellen lee wrote:
Hi, all I have a question on mgcv and ns. Now I want to compare the results from glm, gam and ns. Take a simple model y~x for example. glm1 = glm(y~x, data=data1) gam1 = gam(y~s(x), data=data1) ns1 = glm(y~ns(x),data=data1) In order to confirm the result from glm1 is consistent to those from gam1 and ns1, I want to define degree=1 in mgcv and ns. I am wondering if there is somebody can give me some suggestions? I appreciate.
require(mgcv) require(splines) data(airquality) m1 <- glm(Ozone ~ Wind, data = airquality) m2 <- gam(Ozone ~ Wind, data = airquality) m3 <- glm(Ozone ~ ns(Wind, df = 1), data = airquality) For gam, I don't think you can set a smooth to be linear, which is what I interpret degree = 1 to be (I also don't know where you get degree = 1 from, this isn't anything to do with ns() in package splines). So we just don't specify that Wind be a smoother in the GAM --- not sure if that is what you wanted? Compare the fits using say summary: e.g. summary(m1); summary(m2) Also, from the above, note that these are all linear models (as opposed to generalised) and would be fitted more efficiently using lm(): m4 <- lm(Ozone ~ Wind, data = airquality) m5 <- lm(Ozone ~ ns(Wind, df = 1), data = airquality)
all.equal(fitted(m1), fitted(m2))
[1] TRUE
all.equal(fitted(m1), fitted(m3))
[1] TRUE
all.equal(fitted(m1), fitted(m4))
[1] TRUE
all.equal(fitted(m1), fitted(m5))
[1] TRUE HTH G
Hellen [[alternative HTML version deleted]]
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