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Post Hoc methods for anova in R

There are the multcomp and multtest packages as well as various tools in other packages (estimable in gmodels, TukeyHSD in stats, etc.).  Do any of these do what you want?  If not, then some more detail would help us help you.

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Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.snow at imail.org
801.408.8111