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Calculating the mean in one column with empty cells

Hi
But as Sarah pointed out the result in R from your values (when correctly read) are the same as in Excel. Therefore the problem seems to be in ***your*** data

output from
str(dataSet2$ac_bhar_60d_4d_after_ann[2:10])

can be helpful in diagnosing what may be going on.

Regards
Petr