Odp: An error in fitting a non linear regression
Hi r-help-bounces at r-project.org napsal dne 20.02.2009 11:21:26:
Hi I have a data set with two variables "q" and "depth" as follows: q<-c(tapply(weight[Soil=="Jy"], Depth[Soil=="Jy"], mean)). This commns returns 7 "q" values: 0.687900000 0.845550000 0.405416667 0.152766667 0.033100000 0.031400000 0.005183333 The "depth" values are produced using this command whish "depth" shows
teh
soil depth: depth <--c(5,15,25,35,45,55,65). This return these values for "depth": [1] -5 -15 -25 -35 -45 -55 -65 I have uploaded the plot file in below: http://www.nabble.com/file/p22118160/plot.doc plot.doc Now I want to fit the following decaying exponential model to our data presented in the plot file such that depth is X and q is Y. nreg<-nls(q~a*exp(-b*depth), start=list(a=1, b=0.5)). This command
returns
the following error: Error in nls(q ~ a * exp(-b * depth), start = list(a = 1, b = 0.5)) : singular gradient
With b=0.05 it will converge, however the model seems to be wrong. depth <--c(5,15,25,35,45,55,65) y<-c(0.687900000, 0.845550000, 0.405416667, 0.152766667, 0.033100000, 0.031400000,0.005183333) plot(depth,y) nreg<-nls(y~a*exp(-b*depth), start=list(a=1, b=0.05)) lines(depth, predict(nreg)) Regards Petr
However, if I use positive values of depth i.e. [1] 5 15 25 35 45 55 65 then I recieve the following error: Error in numericDeriv(form[[3]], names(ind), env) : Missing value or an infinity produced when evaluating the model Notice that though in the plot depth is drawn on Y axis but in the regression model "depth" in independent. Plot shows the real world of
what
happne to the crop root growth. Thank you. Saeed Ahmadi -- View this message in context:
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