conditional filling of data.frame - improve code
I think what you're looking for is match. It returns the indexes of the output where the inputs can be matched, and has a nomatch argument incase no match is found, usually people would use NA or 0 for nomatch.
On Thu, Mar 10, 2022, 10:51 Ivan Calandra <ivan.calandra at rgzm.de> wrote:
Dear useRs,
I would like to improve my ugly (though working) code, but I think I
need a completely different approach and I just can't think out of my box!
I have some external information about which sample(s) belong to which
experiment. I need to get that manually into R (either typing directly
in a script or read a CSV file, but that makes no difference):
exp <- list(ex1 = c("sample1-1", "sample1-2"), ex2 = c("sample2-1",
"sample2-2" , "sample2-3"))
Then I have my data, only with the sample IDs:
mydata <- data.frame(sample = c("sample2-2", "sample2-3", "sample1-1",
"sample1-1", "sample1-1", "sample2-1"))
Now I want to add a column to mydata with the experiment ID. The best I
could find is that:
for (i in names(exp)) mydata[mydata[["sample"]] %in% exp[[i]],
"experiment"] <- i
In this example, the experiment ID could be extracted from the sample
IDs, but this is not the case with my real data so it really is a matter
of matching. Of course I also have other columns with my real data.
I'm pretty sure the last line (with the loop) can be improved in terms
of readability (speed is not an issue here). I have close to no
constraints on 'exp' (here I chose a list, but anything could do), the
only thing that cannot change is the format of 'mydata'.
Thank you in advance!
Ivan
--
Dr. Ivan Calandra
Imaging lab
RGZM - MONREPOS Archaeological Research Centre
Schloss Monrepos
56567 Neuwied, Germany
+49 (0) 2631 9772-243
https://www.researchgate.net/profile/Ivan_Calandra
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