Building package problem
Hi Ed, If the only error is in examples then this should work: R CMD check --no-examples foopkg should not have anything to do with vignettes (although those may also not run, who knows). As far as building a binary, look at: R CMD INSTALL --help which leads you to R CMD INSTALL --build foopkg HTH, Josh On Tue, Nov 8, 2011 at 4:35 AM, Eduardo M. A. M. Mendes
<emammendes at gmail.com> wrote:
Dear R-users I am trying to recompile a CRAN package on Windows 32. ? Rtools for 2.14 (that is the version I am running) and miktex were sucessfully installed on my machine. Problems: a) hydroGOF is a CRAN package, but R CMD check does not work on it. C:\Users\eduardo\Documents\R_tests2>R CMD check hydroGOF * using log directory 'C:/Users/eduardo/Documents/R_tests2/hydroGOF.Rcheck' * using R version 2.14.0 (2011-10-31) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'hydroGOF/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'hydroGOF' version '0.3-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking whether package 'hydroGOF' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in 'hydroGOF-Ex.R' failed The error most likely occurred in:
### Name: plot2 ### Title: Plotting 2 Time Series ### Aliases: plot2 ### Keywords: dplot ### ** Examples sim <- 2:11 obs <- 1:10 ## Not run: ##D plot2(sim, obs) ## End(Not run) ################## # Loading daily streamflows of the Ega River (Spain), from 1961 to 1970 require(zoo)
Loading required package: zoo Attaching package: 'zoo' The following object(s) are masked from 'package:base': ? ?as.Date, as.Date.numeric
data(EgaEnEstellaQts) obs <- EgaEnEstellaQts # Generating a simulated daily time series, initially equal to the observed se
ries
sim <- obs # Randomly changing the first 2000 elements of 'sim', by using a normal distri
bution
# with mean 10 and standard deviation equal to 1 (default of 'rnorm'). sim[1:2000] <- obs[1:2000] + rnorm(2000, mean=10) # Plotting 'sim' and 'obs' in 2 separate panels plot2(x=obs, y=sim) # Plotting 'sim' and 'obs' in the same window plot2(x=obs, y=sim, plot.type="single")
Error in as.POSIXlt.character(x, tz, ...) : ?character string is not in a standard unambiguous format Calls: plot2 ... as.POSIXct.default -> as.POSIXct -> as.POSIXlt -> as.POSIXlt.ch aracter Execution halted b) option --binary is no longer available, is that so? ?How can an extension zip can be built on Windows? R CMD build --no-vignettes hydroGOF works. ? And R CMD INSTALL hydroGOFxx.tar.gz too. Many thanks Ed
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Joshua Wiley Ph.D. Student, Health Psychology Programmer Analyst II, ATS Statistical Consulting Group University of California, Los Angeles https://joshuawiley.com/