Trouble with installing Rmpi package
Hi, I made a bit of progress. I went to open-mpi.org and downloaded mpi software and installed it, which went smoothly. Then I re- Executed > install.packages( 'Rmpi' ) which worked, except this time it complained about rsprng. I went to sprng.cs.fsu.edu and downloaded sprng4 and tried installing it. .configure went fine, but make failed. Here's the the failure: mpif77 -DHAVE_CONFIG_H -I. -I. -I../.. -I../../include -I../../include -DSPRNG_MPI -g -O2 -c -o sprngf_simple_mpi_tmp-sprngf-simple_mpi.o `test -f 'sprngf-simple_mpi.F' || echo './'`sprngf-simple_mpi.F mpif77 -g -O2 -o sprngf-simple_mpi.tmp --showme:link -I/usr/local/include -pthread sprngf_simple_mpi_tmp-sprngf-simple_mpi.o -L../../lib -lsprng -lm -lstdc++ -lm -g -O2 -o sprngf-simple_mpi.tmp -I/usr/local/include -pthread sprngf_simple_mpi_tmp-sprngf-simple_mpi.o -L../../lib -lsprng -lm -lstdc++ -lm -pthread -L/usr/local/lib -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl mv: cannot stat `sprng-simple_mpi.tmp': No such file or directory make[4]: *** [sprng_mpi_test] Error 1 I issued: > library( 'Rmpi' ) which didn't complain. I don't want to ignore the failure of rsprng package install, however. Can somebody please assist me as to how I can get sprng4 installed? Thank you. Tena Sakai tsakai at gallo.ucsf.edu
On 1/7/11 3:49 PM, "Tena Sakai" <tsakai at gallo.ucsf.edu> wrote:
Hi, I am having a problem with installing Rmpi package on redhat linux machine. The R I am using is version 2.10.1. Here?s what happens.
install.packages( 'Rmpi' )
--- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/Rmpi_0.5-9.tar.gz' Content type 'application/x-gzip' length 87953 bytes (85 Kb) opened URL ================================================== downloaded 85 Kb * installing *source* package ?Rmpi? ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no configure: error: "Cannot find mpi.h header file" ERROR: configuration failed for package ?Rmpi? * removing ?/usr/local/lib64/R/library/Rmpi? The downloaded packages are in ?/tmp/Rtmp1J1kDj/downloaded_packages? Updating HTML index of packages in '.Library' Warning message: In install.packages("Rmpi") : installation of package 'Rmpi' had non-zero exit status
library ('Rmpi' )
Error in library("Rmpi") : there is no package called 'Rmpi'
I think it is upset because the file mpi.h is missing. Am I right? If so, How would I cure this problem? And if not, what must I do? Please help. Thank you. Tena Sakai tsakai at gallo.ucsf.edu [[alternative HTML version deleted]]