Error when calling (R 4.0.x on Windows) from Python
Note that in R-3.6.3 commandArgs() does not include the arguments intended to be processed by the shell, "1>", "arguments.txt", etc., but in R-4.0.3 it does include them. It is as though an R shell() command was replaced by a system() command so cmd.exe didn't get a chance to process the command line. -Bill On Wed, Jan 27, 2021 at 12:39 AM Martin Maechler
<maechler at stat.math.ethz.ch> wrote:
Martin Maechler
on Tue, 26 Jan 2021 12:37:58 +0100 writes:
Marcel Baumgartner
on Tue, 26 Jan 2021 08:55:48 +0100 writes:
>> Dear all, my colleague posted our issue on stackoverflow:
>> Calling R script from Python does not save log file in
>> version 4 - Stack Overflow
>> [https://stackoverflow.com/questions/65887485/calling-r-script-from-python-does-not-save-log-file-in-version-4]
>> It is about this kind of call to R:
>> R.exe -f code.R --args "~/file.txt" 1> "~/log.txt" 2>&1".
>> The issue is that the log.txt file is not created when
>> running R 4.x.x. The same code works perfectly fine with
>> R 3.6.x.
>> Any idea what's going wrong as of version 4? Regards
>> Marcel
> Dear Marcel, I think the solution is embarrassingly
> simple:
>> From the SO post, where she showed a bit more detail than you
> show here, it's clear you have confused 'R.exe' and
> 'Rscript.exe' and what you say above is not true:
> 'R.exe' was used for R 3.6.0 but for R 4.0.3, you/she used
> 'Rscript.exe' instead.
> ... as you've noticed now, they do behave differently,
> indeed!
Well, this was not the solution to their -- Windows-only -- problem. The problem *is* indeed visible if they only use R.exe (also for R 4.0.3). I've commented more on the SO issue (see above), notably asking for a *minimal* repr.ex. (reproducible example), and one *not* using "<YOUR PATH>" and setwd() .. Martin
______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.