Message-ID: <10633.1139391763@www052.gmx.net>
Date: 2006-02-08T09:42:43Z
From: Mahdi Osman
Subject: lme help
Hi list,
I am fitting microarray data (intensity) model using the lme package in R
environment. I have 5 fixed variables in the model. One of the fixed
variables is genes. I am trying to get p-values for different genes. But I
am getting only one p-value for all genes together. I can get a list of
p-value when I run lm. Why can't this work in lme?
My aim is to do multiple comaprison of all the genes that I have and I can
only do this if I have a list of their p-vales
I was wondering if you can help me solve this problem. That is getting
a list of p-value for each gene in the model using the lme.
Thanks in advance for your help
Regards
Mahdi
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Mahdi Osman (PhD)
E-mail: m_osm at gmx.net