error with the function GOHyperG from GOstats package
Sabrina Carpentier wrote:
I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0,
The release versions of BioC require R-2.0.1. You might try upgrading your R version and trying again, because I cannot replicate this error. Note that if you upgrade to R-2.1.0 (the current version of R), you will need to use the development versions of BioC packages (use develOK=TRUE in your call to getBioC()). These devel versions of the BioC packages are not really that developmental right now, as we are fast approaching the release date for BioC 1.6. Best, Jim
and when I use the function GOHyperG, I have the following error: w1<-as.list(hgu95av2LOCUSID) w2<-unique(unlist(w1)) set.seed(123) myLL<-sample(w2,100) xx <- GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with affymetrix hgu133plus2), but I had the same error... Any help is appreciated Regards, Sabrina Sabrina Carpentier Service Bioinformatique Institut Curie - Bat. Trouillet Rossignol (4e ??tage) 26 rue d'Ulm - 75248 Paris Cedex 5 - FRANCE Tel : +33 1 42 34 65 21 [[alternative HTML version deleted]]
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