Help with ooplot(gplots) and error bars
Jean-Louis Abitbol wrote:
Dear All I am trying to graph a proportion and CI95% by a factor with ooplot (any other better solution ?) It works well until I try to add the confidence interval. this is the error message and and a description of the data:
> dat1
PointEst TT1 1 3.6 TT2 2 5.0 TT3 3 5.8 TT4 4 11.5 TT5 5 7.5 TT5 6 8.7 TT7 7 17.4
dat2
Lower
TT1 1 1.0
TT2 2 2.2
TT3 3 2.7
TT4 4 6.7
TT5 5 3.9
TT5 6 4.6
TT7 7 11.5
dat3
Upper
TT1 1 12.3
TT2 2 11.2
TT3 3 12.1
TT4 4 19.1
TT5 5 14.2
TT5 6 15.6
TT7 7 25.6
ooplot(dat1,type="barplot",col=rich.colors(7,"temperature"),names.arg=c("X","Y","Z","A","B","C","D"),plot.ci=T,
+ ci.l=dat2,ci.u=dat3, xlab="Treatment", ylab="Percent Normalized
Patients")
Error in ooplot.default(dat1, type = "barplot", col = rich.colors(7,
"temperature"), :
'height' and 'ci.u' must have the same dimensions.
I have tried various ways of supplying ci.l and ci.u (including a
vector)
Thanks for the help that anyone can bring,
Regards, JL
One way is to look at the examples for Dotplot in the Hmisc package. Those examples display bootstrap percentile confidence intervals for a mean.
Frank E Harrell Jr Professor and Chair School of Medicine
Department of Biostatistics Vanderbilt University