transforming data frame for use with persp
On Mon, 13 Feb 2006, Denis Chabot wrote:
Hi, This is probably documented, but I cannot find the right words or expression for a search. My attempts failed. I have a data frame of 3 vectors (x, y and z) and would like to transform this so that I could use persp. Presently I have y-level copies of each x level, and a z value for each x-y pair. I need 2 columns giving the possible levels of x and y, and then a transformation of z from a long vector into a matrix of x-level rows and y-level columns. How do I accomplish this?
Well, image() and friends have a rather strange representation, so it
isn't obvious (see the help page:
"Notice that 'image' interprets the 'z' matrix as a table of
'f(x[i], y[j])' values, so that the x axis corresponds to row
number and the y axis to column number, with column 1 at the
bottom, i.e. a 90 degree counter-clockwise rotation of the
conventional printed layout of a matrix.").
So:
Depth <- seq(40,220, 20)
Temp <- seq(-1, 6, 0.5)
My.data <- expand.grid(Depth=Depth, Temp=Temp)
predgam <- -0.5*My.data$Depth + 12.5*My.data$Temp + 8*rnorm(nrow(My.data))
pred.data <- data.frame(My.data, predgam)
library(lattice)
levelplot(predgam ~ Depth + Temp, pred.data) # for sanity check
z <- t(matrix(predgam, nrow=length(Temp), byrow=TRUE)) # see "Notice"
image(Depth, Temp, z)
persp(Depth, Temp, z)
should do it, since the data are already in a regular grid.
In this example, I made a set of x and y values to get predictions from a GAM, then combined them with the predictions into a data frame. This is the one I'd like to transform as described above: My.data <- expand.grid(Depth=seq(40,220, 20), Temp=seq(-1, 6, 0.5)) predgam <- predict.gam(dxt.gam, My.data, type="response") pred.data <- data.frame(My.data, predgam) pred.data has 150 lines and 3 columns. Thanks for your help, Denis Chabot
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