Error in plot.envfit(ef, p.max = 0.1) : (subscript) logical subscript too long
On Sat, 2012-12-29 at 20:40 +0000, Laura Mart?nez Suz wrote:
Hello there, I'm trying to plot vectors with p<0.1 in a NMDS ordination plot using p.max. Below the scripts I'm using. I guess I'm missing something! could you please give me a hand? species<-metaMDS(species_matrix)ef<-envfit(species,environmentaldata_file,permu=999,na.rm=TRUE)efplot(species, dis="sites")plot(ef,p.max=0.1) Error in plot.envfit(ef, p.max = 0.1) : (subscript) logical subscript too long Many thanks! Laura
Hi Laura, Can you send the data to me **off list** so I can run through the code under the debugger and see what is causing the error? I can see where the subscripting occurs related to p.max but can't immediately see under what circumstances the subscript could ever get longer than the object being subscripted. I promise to delete the data once I have tracked the problem down. Cheers, G
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