heatmap.2 adapting the colour scale and text overlay
On Nov 23, 2009, at 10:02 AM, Daniel Brewer wrote:
Hello, I am using heatmap.2 from the gplots library to plot a small symmetrical matrix. This is the command: heatmap. 2 (tempHeat ,symm = T ,trace ="none",cexRow=0.7,cexCol=0.7,col="redgreen",density.info="none") I have a couple of questions: 1) The range is from -0.2 to 0.4 and the colour scheme I am using is redgreen. What I would like is that a zero value to be black, 0.4 strong green and -0.2 red. Is this possible? At the moment around 0.1 is black.
Perhaps:
color.palette = colorRampPalette(c("green", "black", "pink", "red"))
heatmap.2(tempHeat,symm=T,trace="none",cexRow=0.7,cexCol=0.7,
col=color.palette, density.info="none")
2) Is it possible to overlay text on the squares of colour? How
ould one go about doing that.
I am happy to use another heatmap function if ti would be better. I
am not using the original heatmap as it does not provide a colour key.
Thanks
Dan
--
**************************************************************
Daniel Brewer, Ph.D.
Institute of Cancer Research
Molecular Carcinogenesis
Email: daniel.brewer at icr.ac.uk
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