Running R under Sun Grid Engine with OpenMPI tight integration

2009/1/27 Rainer M Krug <r.m.krug at gmail.com>:
On Tue, Jan 27, 2009 at 2:30 AM, Peter Waltman <peter.waltman at gmail.com> wrote:
Hi -

I saw your posting on the R-help mailing list.  Were you ever able to get
this working?  did you end up switching to use the rsge library?
Yes - that is exactly what I did - I am using rsge or, which is in
most cases sufficient for me, starting several instances of R and run
the whole simulation (array processing).

But I would still like to know how I can use the Rmpi and snow on the
Sun Grid Engine.

Please keep me posted,

Rainer
I'm trying to do the same, and not having very much luck getting it going.

Thanks!

Peter Waltman

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Faculty of Science
Natural Sciences Building
Private Bag X1
University of Stellenbosch
Matieland 7602
South Africa

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Hi all,
I have been installed R in SGE but with LAM tight integration, I don't
k now if this help you :s . The problem I had with OpenMPI was that
the load in all nodes waiting for a job and with an instance of R.
Their load up to 100 %, and there isn't a job running on them.
Even so, I will try to configure it with OpenMPI..when I have results
I will post them ok?

Saludos

Running R under Sun Grid Engine with OpenMPI tight integration

Thread (4 messages)