getting error while trying to make dendogram based on gene expression
I am trying to make dendogram based on gene expression matrix , but getting
some error:
I
countMatrix = read.table("count.row.txt",header=T,sep='\t',check.names=F)
colnames(countMatrix)
count_matrix <- countMatrix[,-1] # remove first column
(gene names)
rownames(count_matrix) <- countMatrix[,1] #added first column gene
names as rownames)
nonzero_row <- count_matrix[rowSums(count_matrix) > 0, # removed row sum
0 across all sample
x1= as.matrix(nonzero_row) # converted data into matrix
x=log2(x1+1) # converted into
log value
d <- dist(x, method="euclidean")
h <- hclust(d, method="complete")
*Error:* *** caught segfault *** address 0x7fa39060af28, cause 'memory not mapped' Traceback: 1: hclust(d, method = "complete") Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: Thanks Yogesh