help with formula for clogit
clogit needs to spell out formula plus strata, you can try modify the code
...
d2=d[,c(mols,'group','Age','strata')]
fo<-as.formula(paste(paste('group~','Age',sep=''),'strata(strata)',sep='+'))
log.reg<-clogit(fo,data=d2)
...
Weidong
On Mon, Nov 7, 2011 at 10:19 AM, 1Rnwb <sbpurohit at gmail.com> wrote:
I would like to know if clogit function can be used as below
clogit(group~., data=dataframe)
When I try to use in above format it takes a long time, I would appreciate
some pointers to get multiple combinations tested.
set.seed(100)
?d=data.frame(x=rnorm(20)+5,
?x1=rnorm(20)+5,
?x2=rnorm(20)+5,
?x3=rnorm(20)+5,
?x4=rnorm(20)+5,
?x5=rnorm(20)+5,
?x6=rnorm(20)+5,
?x7=rnorm(20)+5,
?x8=rnorm(20)+5,
group=rep(c(1,2),10), Age=rnorm(20)+35,strata=c(rep(1,10), rep(2,10)))
nam=names(d)[1:9]
results <- c("Protein", "OR", "p-val")
pc3=combinations(n=length(nam),r=2)
for (len in 1:dim(pc3)[2])
?{
?prs=pc3[len,]
?mols=nam[prs]
?d2=d[,c(mols,'group','Age','strata')]
?log.reg<-clogit(group~.,data=d2)
?a = summary(log.reg)$conf.int
?z= summary(log.reg)$coefficients[1,4] ?#ncol in coefficients is 3 * number
of parameters
?pval ?= 2*pnorm(-abs(z))
?res2 = c(paste('IL8+',molecule,sep=''), paste (round(a[1,1],2), " (" ?,
round(a[1,3],2), " - " , round(a[1,4],2), ")" , sep=""), pval)
?results ?= rbind (results ,res2 )
}
Thanks
Sharad
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