Surprising behavior and bugs in R 4.0.4
I have no familiarity with these packages but I did a search in CRAN on api_create and found it is defined in the plotly package. I then confirmed that the seurat package does reference plotly. You might try installing the plotly package before trying to install seurat. HTH, Eric
On Sat, Mar 20, 2021 at 6:05 PM Jiefei Wang <szwjf08 at gmail.com> wrote:
Hi Miso, Have you tried to install Seurat from CRAN? What you were using is the GitHub version of the package and has been actively updating, so the problem might be from the package. Best, Jiefei On Sat, Mar 20, 2021 at 10:32 PM Miso Na <mna3 at jhu.edu> wrote:
Dear helpers, Although I uninstalled and reinstalled R more than 3 times to delete the error in api_create, it did not work. The error is representing on the
very
first page on R consol. Error: could not find function "api_create" I guess this error makes impossible to install library 'SCMAP', 'SingleCellExperiment' or 'Seurat'. For example, I got this error when I tried to install those libraries. Installing package into 'C:/Users/user/Documents/R/win-library/4.0' (as 'lib' is unspecified) Error: could not find function "api_create" Execution halted Error: Failed to install 'Seurat' from GitHub: (converted from warning) installation of package
'C:/Users/user/AppData/Local/Temp/RtmpKYL3Pe/file2c2c6cb0766e/Seurat_4.0.1.tar.gz'
had non-zero exit status My sessionInfo is here!
sessionInfo()
R version 4.0.4 (2021-02-15)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
system code page: 949
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.4
Thanks for your help!
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______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.