140 packages in R Commander!!
Dear Ajay, This is a consequence of installing the dependencies (including "suggested" packages, etc.) of the Rcmdr package, their dependencies, and so on recursively. The alternative would be for the Rcmdr package to specify its direct dependencies via "depends" rather than "suggests," but then these dependencies would be loaded whenever the Rcmdr is loaded. If you have a better idea, I'm certainly open to it, since many, probably most, of the packages that get installed aren't really needed by the Rcmdr or by the packages on which it directly depends. The whole business takes about 10 minutes on my not-all-that-fast Internet connection and occupies about 250 MB (considerably less than 10 US cents at today's hard-disk prices), which doesn't seem terrible to me. Best, John -------------------------------- John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox
-----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org]
On
Behalf Of Ajay Ohri
Sent: October-24-10 12:47 PM
To: R-help at r-project.org
Subject: [R] 140 packages in R Commander!!
Dear List
I just downloaded and installed R 2.12.0 and then installed R Commander .
First it got RCmdr and Car, and then suggested for other packages for
utilizing the full functionality- I clicked yes!
I got 140 packages installed!!! Cran Mirror was UCLA...
Here is the list.
Is this intentional- I can see some packages like snow and multicore which
are desirable but quite optional.(see list below)
Regards
Ajay
'slam' 'fBasics' 'bitops' 'Rglpk' 'snowFT' 'rlecuyer' 'rsprng' 'nws'
'tweedie' 'gtools' 'gdata' 'caTools' 'Ecdat' 'ergm' 'latentnet'
'degreenet'
'shapes' 'snow' 'RColorBrewer' 'statmod' 'cubature' 'kinship' 'gam' 'tripack' 'akima' 'logspline' 'gplots' 'maxLik' 'miscTools' 'sem' 'rgdal' 'network' 'numDeriv' 'statnet' 'rgenoud' 'hexbin' 'ellipse' 'gclus' 'mlbench' 'randomForest' 'SparseM' 'Formula' 'ineq' 'mlogit' 'np' 'plm' 'pscl' 'quantreg' 'ROCR' 'sampleSelection' 'scatterplot3d' 'systemfit' 'truncreg' 'urca' 'oz' 'fUtilities' 'fEcofin' 'RUnit' 'quadprog'
'iterators'
'locfit' 'maps' 'rcom' 'rscproxy' 'sp' 'VGAM' 'MCMCpack' 'sna' 'gee' 'anchors' 'survey' 'ape' 'flexmix' 'rmeta' 'mlmRev' 'MEMSS' 'coda' 'party' 'ipred' 'modeltools' 'e1071' 'AER' 'bdsmatrix' 'DAAG' 'fCalendar'
'fSeries'
'fts' 'its' 'timeDate' 'timeSeries' 'tis' 'tseries' 'xts' 'foreach' 'TSA' 'RSQLite' 'tkrplot' 'sgeostat' 'mapproj' 'tcltk2' 'R2wd' 'png' 'tree'
'VIM'
'mitools' 'Zelig' 'HSAUR' 'mvtnorm' 'lme4' 'robustbase' 'mboost' 'coin' 'xtable' 'sandwich' 'coxme' 'zoo' 'strucchange' 'dynlm' 'biglm' 'chron' 'acepack' 'TeachingDemos' 'Design' 'mice' 'subselect' 'kernlab' 'vcd'
'rgl'
'relimp' 'multcomp' 'lmtest' 'leaps' 'Hmisc' 'effects' 'colorspace' 'aplpack' 'abind' 'RODBC' car Rcmdr Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Sun, Oct 24, 2010 at 9:27 PM, Marcelo Lima <mlimagb at gmail.com> wrote:
Hi all,
I generated a covariance matrix and visualized as a 2D contour plot
(x,y, covariance matrix), I would like to extract from the matrix the
values ( in x and y) that auto-correlate which I will plot as an
normal (x,y(being the values that auto-corelate to a certain x and y
values in my original matrix). Any suggestions?
Cheers,
Marcelo
--
Marcelo Andrade de Lima
UNIFESP - Universidade Federal de Sco Paulo Departamento de Bioqummica
Disciplina de Biologia Molecular Rua Trjs de Maio 100, 4 andar - Vila
Clementino, 04044-020 Lab +55 11 55764438 R.1188 Cell +55 11 92725274
mlima at unifesp.br
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