problems with extractPrediction in package caret
H?ring, Tim (LWF) wrote:
Hi list, I?m working on a predictive modeling task using the caret package. I found the best model parameters using the train() and trainControl() command. Now I want to evaluate my model and make predictions on a test dataset. I tried to follow the instructions in the manual and the vignettes but unfortunately I?m getting an error message I can`t figure out. Here is my code: rfControl <- trainControl(method = "oob", returnResamp = "all", returnData=TRUE, verboseIter = TRUE) rftrain <- train(x=train_x, y=trainclass, method="rf", tuneGrid=tuneGrid, tr.control=rfControl) pred <- predict(rftrain) pred # this works fine expred <- extractPrediction(rftrain) Error in models[[1]]$trainingData : $ operator is invalid for atomic vectors
I cannot reproduce it (not having your data) and I doubt you are using the most recent version which is 3.51. Anyway, *if* it is a bug, then please report to the package maintainer. Best, Uwe Ligges
My predictors are 28 numeric attributes and one factor. I`m working with the latest version of caret and R 2.7.2 on WinXP. Any advice is very welcome. Thanks. TIM ------------------------------------------------------------------------------- Dipl.-Geogr. Tim H?ring Sachgebiet Standort und Bodenschutz (SG 2.1) Bayerische Landesanstalt f?r Wald und Forstwirtschaft Am Hochanger 11 D-85354 Freising Tel.: +49-(0)8161/71-4769 E-Mail: tim.haering at lwf.bayern.de http://www.lwf.bayern.de [[alternative HTML version deleted]] ------------------------------------------------------------------------
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