error message from read.csv in loop
"It seems that your problem is that you are using single quotes inside of the double quotes." That is FALSE. From ?Quotes: "Single and double quotes delimit character constants. They can be used interchangeably but double quotes are preferred (and character constants are printed using double quotes), so single quotes are normally only used to delimit character constants containing double quotes." Of course, pairs of each type of quote must properly match, must not get confused with quotes in the delineated string, etc. , but they are otherwise interchangeable. The whole of ?Quotes, especially the examples, is informative and worth the read (imo). Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Sat, Jul 10, 2021 at 8:20 AM Migdonio Gonz?lez
<migdonio.gonzalez02 at gmail.com> wrote:
It seems that your problem is that you are using single quotes inside of
the double quotes. This is not necessary. Here is the corrected for-loop:
for (j in 1:nrow(ora))
{
mycol <- ora[j,"fname"]
mycsv <- paste0(mycol,".csv")
rdcsv <- noquote(paste0("w:/project/_Joe.B/Oracle/data/", mycsv))
rr <- read.csv(rdcsv)
}
Also note that the rr variable will only store the last CSV, not all CSV.
You will need to initialize the rr variable as a list to store all CSVs if
that is what you require. Something like this:
# Initialize the rr variable as a list.
rr <- as.list(rep(NA, nrow(ora)))
# Run the for-loop to store all the CSVs in rr.
for (j in 1:nrow(ora))
{
mycol <- ora[j,"fname"]
mycsv <- paste0(mycol,".csv")
rdcsv <- noquote(paste0("w:/project/_Joe.B/Oracle/data/", mycsv))
rr[[j]] <- read.csv(rdcsv)
}
Regards
Migdonio G.
On Fri, Jul 9, 2021 at 1:10 PM Kai Yang via R-help <r-help at r-project.org>
wrote:
Hello List,
I use for loop to read csv difference file into data frame rr. The data
frame rr will be deleted after a comparison and go to the next csv file.
Below is my code:
for (j in 1:nrow(ora))
{
mycol <- ora[j,"fname"]
mycsv <- paste0(mycol,".csv'")
rdcsv <- noquote(paste0("'w:/project/_Joe.B/Oracle/data/", mycsv))
rr <- read.csv(rdcsv)
}
but when I run this code, I got error message below:
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file
''w:/project/_Joe.B/Oracle/data/ASSAY_DEFINITIONS.csv'': No such file or
directory
so, I checked the rdcsv and print it out, see below:
[1] 'w:/project/_Joe.B/Oracle/data/ASSAY_DEFINITIONS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/ASSAY_DISCRETE_VALUES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/ASSAY_QUESTIONS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/ASSAY_RUNS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/DATA_ENTRY_PAGES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/DISCRETE_VALUES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/ENTRY_GROUPS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/GEMD_CODELIST_GROUPS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/GEMD_CODELIST_VALUES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/GEMD_LOT_DEFINITIONS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/GEMD_SAMPLES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/MOLECULAR_WAREHOUSE.csv'
[1] 'w:/project/_Joe.B/Oracle/data/QUESTION_DEFINITIONS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/QUESTION_GROUPS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/RESPONDENTS.csv'
[1] 'w:/project/_Joe.B/Oracle/data/RESPONSES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/SAMPLE_LIST.csv'
[1] 'w:/project/_Joe.B/Oracle/data/SAMPLE_LIST_NAMES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/SAMPLE_PLATE_ADDRESSES.csv'
[1] 'w:/project/_Joe.B/Oracle/data/STORAGE_UNITS.csv'
it seems correct. I copy and paste it into a code :
rr <- read.csv( 'w:/project/_Joe.B/Oracle/data/RESPONDENTS.csv')
and it works fine.
Can someone help me debug where is the problem in my for loop code?
Thanks,
Kai
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