hc2Newick is different than th hclust dendrogram
Hi R helpers... I am having troubles because of the discrepancy between the dendrogram plotted from hclust and what is wrote in the hc2Newick file. I've got a matrix C: hc <- hclust(dist(C)) plot(hc) with the: write(hc2Newick(hc),file='test.newick') both things draw completely different "trees"... I have also tried with the raw distance matrix D and also the agnes function, but the same happens. The hclus and agnes dendrogram is logical, whereas the newick tree is not. Thanks for any help! PS> attached C matrix that is a 112x112 matrix
Jose Sergio Hleap Lozano, M. Sc. Ph. D. Student, Dalhousie University Researcher, SQUALUS Foundation