survit function and cox model with frailty
On Tue, 20 May 2003, Thomas W Blackwell wrote:
I reassure you that you CAN get to the bottom of this.
I think you're making progress. One step going forward
might be to look at help("model.frame"), since that's
what causes the initial error message, and think about
how the arguments get matched in survfit().
Actually I think one CAN'T get to the bottom of this. I don't think survfit works on models with frailties. I don't actually understand what the intent is (and why the multiple time periods with identical covariates), but it isn't going to be at all straightforward to do a proper prediction for a single new case: the survival curve should be the survival distribution with the frailty integrated out, which is hard. It should be possible to do a prediction setting the frailty to 1, but it isn't. Given that coxph will fit user-defined penalised likelihoods survfit would have to be fairly clever to guess what it was supposed to do in each circumstance. -thomas