How to re-order clusters of hclust output?
Hi Michael, Thanks for the info! I think the key function I was missing is: order.dendrogram and not REorder.dendrogram. It returns me the new order, so I think I should get going with that :) Emmanuel On 11/05/2012, R. Michael Weylandt <michael.weylandt at gmail.com>
<michael.weylandt at gmail.com> wrote:
I don't have a general answer to your question, but 1L and 2L are just the integers 1 and 2 (the L makes them integers instead of doubles which is useful for some things) Michael On May 11, 2012, at 2:15 PM, Emmanuel Levy <emmanuel.levy at gmail.com> wrote:
Hello, The heatmap function conveniently has a "reorder.dendrogram" function so that clusters follow a certain logic. It seems that the hclust function doesn't have such feature. I can use the "reorder" function on the dendrogram obtained from hclust, but this does not modify the hclust object itself. I understand that the answer should be within the "heatmap" function given that it uses hclust to work, but I find it very hard to follow actually. For example I just don;t get what is 1L and 2L. Any help would be appreciated! Thanks, Emmanuel
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