Problems installing SJava

Hello, I am trying to install SJava but I haven't been able to complete it
successfully. I have tried to install it from bioconductor using the
followin code and got the following output:

source("http://www.bioconductor.org/biocLite.R")

BioC_mirror = http://bioconductor.org
Change using chooseBioCmirror().

     biocLite("SJava")

Using R version 2.12.2, biocinstall version 2.7.7.
Installing Bioconductor version 2.7 packages:
[1] "SJava"
Please wait...

Installing package(s) into ?C:\Users\Hp\Documents/R/win-library/2.12?
(as ?lib? is unspecified)
Mensajes de aviso perdidos
In getDependencies(pkgs, dependencies, available, lib) :
   package ?SJava? is not available


And I have also tried the instructions: found in
http://www.omegahat.org/RSJava/.

cd *$RHOME*/src/library
    unzip SJava_0.69-0.zip
    cd SJava
    ./configure.win $RHOME
    cd *$RHOME*/src/gnuwin32
    make pkg-SJava

But when I tried the line unzip SJava_0.69-0.zip it tells me the command
cannot be recognized. If I unzip the file manually and then try the
line ./configure.win
$RHOME I get "." ccannot be recognized. Does somebody know what might I be
doing wrong. Or which is an easier way to install this package?

My computer is on Window 7 professional (32 bits)

Thank you

Felipe Parra

	[[alternative HTML version deleted]]

Uggs, as I understand rJava is for calling Java from within R and what I
need is to call R within Java. Am I wrong?

2011/8/17 Uwe Ligges<ligges at statistik.tu-dortmund.de>

Are you sure "rJava" is not fine for you?

Uwe Ligges


On 16.08.2011 17:16, Luis Felipe Parra wrote:

Hello, I am trying to install SJava but I haven't been able to complete it
successfully. I have tried to install it from bioconductor using the
followin code and got the following output:

  source("http://www.**bioconductor.org/biocLite.R<http://www.bioconductor.org/biocLite.R>

")

BioC_mirror = http://bioconductor.org
Change using chooseBioCmirror().

     biocLite("SJava")

Using R version 2.12.2, biocinstall version 2.7.7.
Installing Bioconductor version 2.7 packages:
[1] "SJava"
Please wait...

Installing package(s) into ?C:\Users\Hp\Documents/R/win-**library/2.12?
(as ?lib? is unspecified)
Mensajes de aviso perdidos
In getDependencies(pkgs, dependencies, available, lib) :
   package ?SJava? is not available


And I have also tried the instructions: found in
http://www.omegahat.org/**RSJava/<http://www.omegahat.org/RSJava/>.

cd *$RHOME*/src/library
    unzip SJava_0.69-0.zip
    cd SJava
    ./configure.win $RHOME
    cd *$RHOME*/src/gnuwin32
    make pkg-SJava

But when I tried the line unzip SJava_0.69-0.zip it tells me the command
cannot be recognized. If I unzip the file manually and then try the
line ./configure.win
$RHOME I get "." ccannot be recognized. Does somebody know what might I be
doing wrong. Or which is an easier way to install this package?

My computer is on Window 7 professional (32 bits)

Thank you

Felipe Parra

        [[alternative HTML version deleted]]