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package installation problem

3 messages · robin hankin, Robert M. Ullrey

Original
robin hankin
# 
(this after asking the package author)

Hi

I cannot install the rmvnorm package under R-2.3.0, or R-2.3.1 beta.
It installs fine under R-2.2.1.

transcript for installation under R-2.3.0 follows.


Robin-Hankins-Computer:~/scratch% R --version
R version 2.3.0 (2006-04-24)
Copyright (C) 2006 R Development Core Team

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License.  For more information about
these matters, see http://www.gnu.org/copyleft/gpl.html.

Robin-Hankins-Computer:~/scratch% sudo R CMD INSTALL  
mvtnorm_0.7-2.tar.gz
* Installing *source* package 'mvtnorm' ...
** libs
gfortran   -fPIC -fno-common  -g -O2 -c mvt.f -o mvt.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ 
include -I/Library/Frameworks/R.framework/Resources/include  -I/sw/ 
include -I/usr/local/include   -fPIC -fno-common  -Wall -pedantic -O2  
-std=gnu99 -c randomF77.c -o randomF77.o
gcc -flat_namespace -bundle -undefined suppress -L/sw/lib -L/usr/ 
local/lib -o mvtnorm.so mvt.o randomF77.o  -L/usr/local/gfortran/lib/ 
gcc/powerpc-apple-darwin8.2.0/4.1.0 -L/usr/local/gfortran/lib - 
lgfortran -lgcc_s -lSystemStubs -lSystem -F/Library/Frameworks/ 
R.framework/.. -framework R
** arch - i386
gfortran-4.0 -arch i386   -fPIC -fno-common  -g -O2 -march=pentium-m - 
mtune=prescott -c mvt.f -o mvt.o
make: gfortran-4.0: Command not found
make: *** [mvt.o] Error 127
chmod: /Library/Frameworks/R.framework/Versions/2.3/Resources/library/ 
mvtnorm/libs/i386/*: No such file or directory
** arch - ppc
gfortran-4.0 -arch ppc   -fPIC -fno-common  -g -O2 -c mvt.f -o mvt.o
make: gfortran-4.0: Command not found
make: *** [mvt.o] Error 127
chmod: /Library/Frameworks/R.framework/Versions/2.3/Resources/library/ 
mvtnorm/libs/ppc/*: No such file or directory
ERROR: compilation failed for package 'mvtnorm'
** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/ 
library/mvtnorm'
** Restoring previous '/Library/Frameworks/R.framework/Versions/2.3/ 
Resources/library/mvtnorm'
Robin-Hankins-Computer:~/scratch%




anyone?

--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
  tel  023-8059-7743
robin hankin
# 
Hello everyone.


After some very welcome offline advice, I now have the mvtnorm
package working on R-2.3.0; here is my solution for
MacOSX.

There were two problems: first, make could not find gcc-4.0.
To solve this, add the relevant directory to PATH.  For me, this is

PATH=$PATH:/usr/local/gcc4.0/bin/

Now the second problem is that the file for -lgfortran can't be found.
To solve this, add

FLIBS=-L/usr/local/gcc4.0/lib

to the Makevars file.



best wishes


rksh
On 23 May 2006, at 08:25, Robin Hankin wrote:

            

      
      
      
    

        

      
      
    

        
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
  tel  023-8059-7743

  
  


  


      

    

    

      
      

        


  

        

      Robert M. Ullrey
    

    

      
      #
    

  


  

      
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Robin,

Thanks for the tip.

I already had gcc in my path, but also had to add the -lgfortran line  
in Makevars.

Worked as you said.

Cheers

Robert

        
On May 23, 2006, at 1:57 AM, Robin Hankin wrote:

        

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

        
- --
Robert M. Ullrey
Special Reportage for Crises Intervention and Mediation
Reportage Sp?cial pour des Crises Interposition et M?diation
133 Antelope Street
Woodland, CA 95695 USA
mobile (t?l?phone cellulaire): +01-916-600-5816
Skype (t?l?phone international): robert.ullrey
email: robert_ullrey at mac.com



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